Category: Numerical Simulations
- ChatGPT: What is the most expensive tool in simulation of biology ? ()
As an AI language model, I don’t have access to the latest information about the pricing of all simulation tools in biology. However, one example of an expensive simulation tool in biology is the NAMD (Nanoscale Molecular Dynamics) software, developed by the Theoretical and Computational Biophysics Group at the University of Illinois at Urbana-Champaign. NAMD […]
- ChatGPT: What is the most expensive tool in simulation of biology ? ()
What is the most expensive tool in simulation of biology entities ? The cost of simulation tools in biology can vary widely depending on the specific software and licensing options chosen. However, one example of a high-end simulation tool in biology is the Desmond software suite developed by D. E. Shaw Research. Desmond is a […]
- ChatGPT: Can you provide me 50 names of simulated tools in biology please? ()
Can you provide me 50 names of simulated tools in biology please? Certainly, here are fifty simulated tools in biology: Virtual Cell (VCell) SimBioSys CompuCell3D PhysiCell NetLogo COPASI BioNetGen PySB CellDesigner Kinetikit Gepasi E-Cell System Systems Biology Markup Language (SBML) Cytoscape Dizzy Grako NeuroMatic Simulink FlexGen MCell Gnuplot Matlab Octave Mathematica R BioSimSpace Bioinformatics Toolkit […]
- ChatGPT: Can you provide me 10 names of simulated tools in biology please? ()
Can you provide me 10 names of simulated tools in biology please? Certainly, here are ten simulated tools in biology: Virtual Cell (VCell) SimBioSys CompuCell3D PhysiCell NetLogo COPASI BioNetGen PySB CellDesigner Kinetikit These tools use computational models to simulate biological systems at various levels of complexity, from individual molecules to whole organisms. They are used […]
- CompuCell3D ()
A thirtieth anniversary! Back on March 16th, 1992, François Graner and James Glazier submitted our very first paper on the Cellular Potts Model/Glazier-Graner-Hogeweg model to Physical Review Letters. We had no idea at that point that the method would still be used today and would be implanted in a dozen different modeling frameworks. As of […]
- VCell Modeling & Analysis Software ()
VCell VCell (Virtual Cell) is a comprehensive platform for modeling cell biological systems that is built on a central database and disseminated as a web application. One-stop simulation shopping: deterministic (compartmental ODE or reaction-diffusion-advection PDE with support for 2D kinematics), stochastic reactions (SSA solvers), spatial stochastic (reaction-diffusion with Smoldyn), hybrid deterministic/stochastic and network-free agent based […]
- A question to ChatGPT about simulations in biology ()
is there a product about simulation of large biological entity Yes, there are several software products that can be used for simulating large biological entities, such as cells, tissues, and organs. These products typically use mathematical models and computational algorithms to simulate the behavior of biological systems, allowing researchers to study complex biological phenomena and […]
- ChatGPT’s information about reviving cryonics patients considering digital simulation ()
Although digital simulations can be useful to help plan future procedures to resuscitate cryonic patients, they are not sufficient to guarantee success. It would take a comprehensive understanding of biology, neurology, regenerative medicine and nanotechnology to successfully resuscitate cryonic patients.
- Bio-numerical Simulations with SimBio ()
Abstract The central objective of the SimBio§ project is the improvement of clinical and medical practices by the use of large-scale numerical simulation for bio-medical problems. SimBio provides a generic simulation environment running on parallel and distributed computing systems, An innovative key feature is the input of patient specific data to the modelling and simulation […]
- BioDynaMo modelling platform accelerates biological simulation and more ()
The BioDynaMo project, launched by CERN openlab in 2015, has now reached maturity and is seeking new applications BioDynaMo (Biology Dynamics Modeller) is an open-source software platform for creating, running and visualising all kinds of 3D agent-based simulations. Agent-based modelling focuses on the individual active components of a system. It is a powerful methodology for […]
- Realistic computer models of brain cells ()
Investigators have created the most bio-realistic and complex computer models of individual brain cells — in unparalleled quantity. Their research details how these models could one day answer questions about neurological disorders — and even human intellect — that aren’t possible to explore through biological experiments. Cedars-Sinai investigators have created the most bio-realistic and complex […]
- ‘Game-changing’ study offers a powerful computer-modeling approach to cell simulations ()
A milestone report proposes a new technique for modeling molecular life with computers. The advance promises new insights into the fundamental biology of a cell, as well as faster and more precise treatment of human disease. A milestone report from the University of Kansas appearing this week in the Proceedings of the National Academy of […]
- Using machine learning to better understand how water behaves ()
Water has puzzled scientists for decades. For the last 30 years or so, they have theorized that when cooled down to a very low temperature like -100C, water might be able to separate into two liquid phases of different densities. Like oil and water, these phases don’t mix and may help explain some of water’s […]
- Institute for Advanced Simulation (IAS) Jülich Supercomputing Centre (JSC) ()
https://www.fz-juelich.de/ias/jsc/EN/Home/home_node.html