{"id":1354,"date":"2023-02-26T02:59:35","date_gmt":"2023-02-26T02:59:35","guid":{"rendered":"https:\/\/cryonicsrevival.com\/?p=1354"},"modified":"2023-02-26T02:59:35","modified_gmt":"2023-02-26T02:59:35","slug":"vcell-modeling-analysis-software","status":"publish","type":"post","link":"https:\/\/jonathandespres.com\/cryonicsrevival\/2023\/02\/26\/vcell-modeling-analysis-software\/","title":{"rendered":"VCell Modeling & Analysis Software"},"content":{"rendered":"

VCell<\/p>\n

VCell (Virtual Cell) is a comprehensive platform for modeling cell biological systems that is built on a central database and disseminated as a web application.<\/p>\n

One-stop simulation shopping: deterministic (compartmental ODE or reaction-diffusion-advection PDE with support for 2D kinematics), stochastic reactions (SSA solvers), spatial stochastic (reaction-diffusion with Smoldyn), hybrid deterministic\/stochastic and network-free agent based simulations. Support for membrane flux, lateral membrane diffusion and electrophysiology.<\/p>\n

Explicit network or graphically expressed rules can be used to model<\/p>\n

Free with automatic installers for Windows, Mac OS and Linux.
\nBiology-based interface for inexperienced modelers; enter reactions and pathways and VCell automatically creates the math for you. Experienced modelers can enter math directly.<\/p>\n

Our remote servers can run complex simulations from any low-cost laptop<\/p>\n

Geometries from 2D or 3D microscope images or from idealized analytical expressions.<\/p>\n

Access models and simulations from anywhere using the VCell database; models can be shared among collaborators or made publicly available.<\/p>\n","protected":false},"excerpt":{"rendered":"

VCell VCell (Virtual Cell) is a comprehensive platform for modeling cell biological systems that is built on a central database and disseminated as a web application. One-stop simulation shopping: deterministic (compartmental ODE or reaction-diffusion-advection PDE with support for 2D kinematics), stochastic reactions (SSA solvers), spatial stochastic (reaction-diffusion with Smoldyn), hybrid deterministic\/stochastic and network-free agent based […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[34,24],"tags":[],"_links":{"self":[{"href":"https:\/\/jonathandespres.com\/cryonicsrevival\/wp-json\/wp\/v2\/posts\/1354"}],"collection":[{"href":"https:\/\/jonathandespres.com\/cryonicsrevival\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/jonathandespres.com\/cryonicsrevival\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/jonathandespres.com\/cryonicsrevival\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/jonathandespres.com\/cryonicsrevival\/wp-json\/wp\/v2\/comments?post=1354"}],"version-history":[{"count":1,"href":"https:\/\/jonathandespres.com\/cryonicsrevival\/wp-json\/wp\/v2\/posts\/1354\/revisions"}],"predecessor-version":[{"id":1355,"href":"https:\/\/jonathandespres.com\/cryonicsrevival\/wp-json\/wp\/v2\/posts\/1354\/revisions\/1355"}],"wp:attachment":[{"href":"https:\/\/jonathandespres.com\/cryonicsrevival\/wp-json\/wp\/v2\/media?parent=1354"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/jonathandespres.com\/cryonicsrevival\/wp-json\/wp\/v2\/categories?post=1354"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/jonathandespres.com\/cryonicsrevival\/wp-json\/wp\/v2\/tags?post=1354"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}